Explore projects
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IOF-group / Applications / 003485-AutomationFluigentAriaNIS-Elements
GNU Affero General Public License v3.0A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).
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Peter SYNAK / SuperDuperTopoFixer
MIT LicenseA robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.
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IOF-group / Teaching / PyxelPerfect
GNU Affero General Public License v3.0Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.
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IOF-group / Image-analysis / Snippets / ImageJ / ExportTif-MultiseriesFiles
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / ImageRegistration-RigidBody
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / ImageRegistration-ReferenceImage
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / RotateImage-UserLine
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / Python / Omnipose-PredictMovie
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / FileHandling-VSI-SlideScanner
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / Correct-FlatField
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / Concatenate-MultiSeries
GNU Affero General Public License v3.0Updated -
IOF-group / Parts / Leica-z-galvo-storage-stand
GNU Affero General Public License v3.0Storage platform to keep a galvo stage insert safe, when not in use
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IOF-group / Parts / Zeiss-multiwell-chamber-stage-insert-clamp
GNU Affero General Public License v3.0Fastener for multiwell chambered slide holders on a Zeiss stage insert
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IOF-group / Parts / Zeiss-Lightsheet7-objective-storage-container
GNU Affero General Public License v3.0Robust container to keep immersion objectives safe, when not mounted on the lightsheet microscope
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IOF-group / Parts / Zeiss-Lightsheet7-chamber-holder
GNU Affero General Public License v3.0Stand to hold a sample chamber of a Zeiss lightheet horizontally during preparation
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Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024
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IOF-group / Teaching / 2024-Talk-MarimoForImageAnalysis
GNU Affero General Public License v3.0A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024
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IOF-group / Image-analysis / Snippets / 01-General-information
GNU Affero General Public License v3.0Updated -
IOF-group / Image-analysis / Snippets / ImageJ / LineProfile-3dMovingSphere
GNU Affero General Public License v3.0Updated -
JonasGroup / FPulse
GNU General Public License v3.0 or laterFPulse is data acquistion system for patch-clamp recordings, based in CED1401 hardware, and IgorPro.
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