Explore projects

Code to simulate and analyze IBD-sharing between samples of a two-dimensional population.

Prevent fluids from seeping into your microscope body.

Robust container to keep immersion objectives safe, when not mounted on the lightsheet microscope

A collection of pipelines that can be used for different bioinformatics analyses on the IST cluster.

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

A simple ND2 Series exporter script

GIT tutorial code

Automatic 3D Dendritic Spine Quantification with ilastik and Imaris

A Quarto book to document brain registration methods and tools.

Homogenized Yarn-Level Cloth - macro-scale cloth simulation using arcsim-v0.2.1

Mechanics-Aware Deformation of Yarn Pattern Geometry

The hlab environment. Contains all of our dependencies, custom control and analysis code.

Source codes for the manuscript: "Replicability of introgression under linked, polygenic selection."

Analysis code and data for ELife publication: "Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling"

Generates Second Order Networks with prescribed second order motif frequencies This is the local version of Nykamp code with our patches used in the Paper Guzman et al. Science 2016

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.