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Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

A simple ND2 Series exporter script

Object Detection with Grouped Instances. See https://github.com/ameroyer/ODGI for the official clean version of the code.

Probabilistic Image Colorization. Mirror of https://github.com/ameroyer/PIC

GIT tutorial code

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

Automatic 3D Dendritic Spine Quantification with ilastik and Imaris

Generates Second Order Networks with prescribed second order motif frequencies This is the local version of Nykamp code with our patches used in the Paper Guzman et al. Science 2016

Homogenized Yarn-Level Cloth - macro-scale cloth simulation using arcsim-v0.2.1

Mechanics-Aware Deformation of Yarn Pattern Geometry

Code related to research on MRF MAP inference.

The hlab environment. Contains all of our dependencies, custom control and analysis code.