Explore projects

A python script to delete old files on Slack.

Compare and analyze PSFs.

Prevent fluids from seeping into your microscope body.

Homogenized Yarn-Level Cloth - macro-scale cloth simulation using arcsim-v0.2.1

This repository contains various scripts for automation (mostly for Linux)

A collection of pipelines that can be used for different bioinformatics analyses on the IST cluster.

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

A simple ND2 Series exporter script

Unbleachable beads for diagnosing issues in the detection path of confocal microscopes

Helps you keep a close eye on your objectives.

Homogenized Yarn-Level Cloth - microscale simulation and fitting

GIT tutorial code

3D printed hook to exchange samples without the need for draining and uninstalling the chamber.

Automatic 3D Dendritic Spine Quantification with ilastik and Imaris

A Quarto book to document brain registration methods and tools.

Mechanics-Aware Deformation of Yarn Pattern Geometry

The hlab environment. Contains all of our dependencies, custom control and analysis code.