Explore projects

Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void

A robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.

A more general (arb. pixel format, fractional shift, stacks) reimplementation of https://imagej.net/ij/plugins/correct-shift.html to perform post-acquisition bi-directional scanning correction.

Code related to research on MRF MAP inference.

Code for Hybrid Method

Workshop about FAIR principles, research data management (RDM) and good practices in figure generation by the Imaging and Optics Facility (IOF) team at ISTA.

Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

3D printed hook to exchange samples without the need for draining and uninstalling the chamber.

A collection of pipelines that can be used for different bioinformatics analyses on the IST cluster.