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Collection of Imaris Python(3) Extensions from the Imaging and Optics Facility (IOF), Institute of Science and Technology Austria (ISTA)

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

A stage insert in well-plate format to hold and image up to 3 slides, principally applicable for any stage capable of holding a well-plate.

A robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.

Video processing pipeline for the pre-processing of fish-eye distorted videos for behavioral analysis. The videos need to be renamed, cropped, and corrected for distortion before being used in the behavioral analysis pipeline for training and prediction.

Make the measurements of PIN lateralization automated by measuring the intensity at the basal and lateral side of each cell in the endodermis of the rot tip of Arabidopsis.

Conversion and visualization of TSOAX data

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).