Explore projects
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Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void
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A robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.
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A more general (arb. pixel format, fractional shift, stacks) reimplementation of https://imagej.net/ij/plugins/correct-shift.html to perform post-acquisition bi-directional scanning correction.
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Workshop about FAIR principles, research data management (RDM) and good practices in figure generation by the Imaging and Optics Facility (IOF) team at ISTA.
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Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.
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Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024
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3D printed hook to exchange samples without the need for draining and uninstalling the chamber.
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A collection of pipelines that can be used for different bioinformatics analyses on the IST cluster.
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