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Quantification of HCR in situ signal speckles in overall area or per individual cell. Main goal is to replicate publication results of difference marker expression between left and right sides in frogs.

This repository contains various scripts for automation (mostly for Linux)

Le Groupe Wojtan's Graphics of Gravelly Granular Grandeur

Le Groupe Wojtan's Marvel of Meticulous MPM Mayhem

Le Groupe Wojtan's Frolic of Frenetic Friction Frenzy

Glorious GLFW GUI for Frenetic Friction Frolicking

Training material based on Carpentries curriculum Building Better Research Software

Batch processing of slide scanner data: How we process (semi-)automatically Zeiss AxioScan Z1 data presented on the Bio-Optics meeting 2025 at Boku.

Integrated Python pipeline to process arbitrary-size .czi files

A Quarto book to document brain registration methods and tools.

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).