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This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:

Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.

Le Groupe Wojtan's Frolic of Frenetic Friction Frenzy

Quantification of HCR in situ signal speckles in overall area or per individual cell. Main goal is to replicate publication results of difference marker expression between left and right sides in frogs.

Code related to research on MRF MAP inference.

Storage platform to keep a galvo stage insert safe, when not in use

Integrated Python pipeline to process arbitrary-size .czi files

A more general (arb. pixel format, fractional shift, stacks) reimplementation of https://imagej.net/ij/plugins/correct-shift.html to perform post-acquisition bi-directional scanning correction.

Protects your calibration objective.

1-day long course and hands-on session for image analysis and ImageJ fundamentals.

A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024