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This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:

Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.

A simple ND2 Series exporter script

GIT tutorial code

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

Analysis code and data for ELife publication: "Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling"

The hlab environment. Contains all of our dependencies, custom control and analysis code.

Homogenized Yarn-Level Cloth - microscale simulation and fitting

Prevent fluids from seeping into your microscope body.

Compare and analyze PSFs.

Generates Second Order Networks with prescribed second order motif frequencies This is the local version of Nykamp code with our patches used in the Paper Guzman et al. Science 2016

3D printed hook to exchange samples without the need for draining and uninstalling the chamber.

Video processing pipeline for the pre-processing of fish-eye distorted videos for behavioral analysis. The videos need to be renamed, cropped, and corrected for distortion before being used in the behavioral analysis pipeline for training and prediction.

Probabilistic Image Colorization. Mirror of https://github.com/ameroyer/PIC

Mechanics-Aware Deformation of Yarn Pattern Geometry

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).