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This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:

Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

A simple ND2 Series exporter script

(ReCA) Recommendation with Context Awareness using Multi-Environment Markov Decision Processes. Mirror of https://github.com/ameroyer/ReCA

Object Detection with Grouped Instances. See https://github.com/ameroyer/ODGI for the official clean version of the code.

Probabilistic Image Colorization. Mirror of https://github.com/ameroyer/PIC

GIT tutorial code

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

The hlab environment. Contains all of our dependencies, custom control and analysis code.

Analysis code and data for ELife publication: "Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling"

Prevent fluids from seeping into your microscope body.

Compare and analyze PSFs.

Code to simulate and analyze IBD-sharing between samples of a two-dimensional population.

3D printed hook to exchange samples without the need for draining and uninstalling the chamber.

Generates Second Order Networks with prescribed second order motif frequencies This is the local version of Nykamp code with our patches used in the Paper Guzman et al. Science 2016

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).

Initial contact with git (and GitLab). How to initiate your first repository, clone existing repositories, see changes, commit changes, revert changes, create and merge branches.