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IOF-group / Facility-tools / 001606-LightPowerMeasurementZenBlue
GNU Affero General Public License v3.0This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:
Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.
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wojtan-group / Yi-Lu-Chen / FrictionFrenzy
MIT LicenseLe Groupe Wojtan's Frolic of Frenetic Friction Frenzy
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IOF-group / Image-analysis / HCR-SpeckleQuantification
GNU Affero General Public License v3.0Quantification of HCR in situ signal speckles in overall area or per individual cell. Main goal is to replicate publication results of difference marker expression between left and right sides in frogs.
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Manas BHARGAVA / mesh-simplification-for-unfolding
Mozilla Public License 2.0Updated -
imaging & optics facility / careless
GNU General Public License v2.0 or laterUpdated -
Christoph Sommer / frapdiff
GNU General Public License v3.0 or laterUpdated -
To build a linkage map for asian Artemia species (Artemia sinica and Artemia Kazakhstan) based on crosses information and RNA-seq markers.
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IOF-group / Image-analysis / Snippets / ImageJ / ImageRegistration-ReferenceImage
GNU Affero General Public License v3.0Updated -
Robert Hauschild / objective cage
Creative Commons Attribution Non Commercial 4.0 InternationalProtects your calibration objective.
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Robert Hauschild / BiDicorrect
MIT LicenseA more general (arb. pixel format, fractional shift, stacks) reimplementation of https://imagej.net/ij/plugins/correct-shift.html to perform post-acquisition bi-directional scanning correction.
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