Explore projects
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IOF-group / Facility-tools / 001606-LightPowerMeasurementZenBlue
GNU Affero General Public License v3.0This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:
Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.
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IOF-group / Image-analysis / HCR-SpeckleQuantification
GNU Affero General Public License v3.0Quantification of HCR in situ signal speckles in overall area or per individual cell. Main goal is to replicate publication results of difference marker expression between left and right sides in frogs.
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wojtan-group / Yi-Lu-Chen / FrictionFrenzy
MIT LicenseLe Groupe Wojtan's Frolic of Frenetic Friction Frenzy
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IOF-group / Parts / Zeiss-Lightsheet7-chamber-holder
GNU Affero General Public License v3.0Stand to hold a sample chamber of a Zeiss lightheet horizontally during preparation
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Robert Hauschild / objective cage
Creative Commons Attribution Non Commercial 4.0 InternationalProtects your calibration objective.
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IOF-group / Image-analysis / Snippets / ImageJ / ImageRegistration-ReferenceImage
GNU Affero General Public License v3.0Updated -
Manas BHARGAVA / mesh-simplification-for-unfolding
Mozilla Public License 2.0Updated -
IOF-group / Parts / Leica-z-galvo-storage-stand
GNU Affero General Public License v3.0Storage platform to keep a galvo stage insert safe, when not in use
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imaging & optics facility / careless
GNU General Public License v2.0 or laterUpdated -
Christoph Sommer / frapdiff
GNU General Public License v3.0 or laterUpdated -
To build a linkage map for asian Artemia species (Artemia sinica and Artemia Kazakhstan) based on crosses information and RNA-seq markers.
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IOF-group / Teaching / 2025-Outreach-ImageAnalysis-Bootcamp
GNU Affero General Public License v3.01-day long course and hands-on session for image analysis and ImageJ fundamentals.
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IOF-group / Parts / BD-FACSMelody-filter-holder
GNU Affero General Public License v3.0Updated -
Robert Hauschild / Cut Guide
Creative Commons Attribution Non Commercial 4.0 InternationalCut guide to safely get samples out of the Beem capsules.
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IOF-group / Teaching / 2024-Outreach-ToneYourFigures
GNU Affero General Public License v3.0Workshop about FAIR principles, research data management (RDM) and good practices in figure generation by the Imaging and Optics Facility (IOF) team at ISTA.
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