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IOF-group / Facility-tools / 001606-LightPowerMeasurementZenBlue
GNU Affero General Public License v3.0This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:
Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.
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Yi-Lu CHEN / primal_dual_contacts
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Robert Hauschild / objective cage
Creative Commons Attribution Non Commercial 4.0 InternationalProtects your calibration objective.
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Robert Hauschild / Cut Guide
Creative Commons Attribution Non Commercial 4.0 InternationalCut guide to safely get samples out of the Beem capsules.
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Training material based on Carpentries curriculum Building Better Research Software
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IOF-group / Teaching / 2024-Talk-MarimoForImageAnalysis
GNU Affero General Public License v3.0A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024
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Alois SCHLOEGL / Biosig
GNU General Public License v3.0 onlyUpdated -
Christoph Sommer / frapdiff
GNU General Public License v3.0 or laterUpdated -
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Manas BHARGAVA / mesh-simplification-for-unfolding
Mozilla Public License 2.0Updated -
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Robert Hauschild / BiDicorrect
MIT LicenseA more general (arb. pixel format, fractional shift, stacks) reimplementation of https://imagej.net/ij/plugins/correct-shift.html to perform post-acquisition bi-directional scanning correction.
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