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Training material based on Carpentries curriculum Building Better Research Software

Batch processing of slide scanner data: How we process (semi-)automatically Zeiss AxioScan Z1 data presented on the Bio-Optics meeting 2025 at Boku.

A Quarto book to document brain registration methods and tools.

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).

1-day long course and hands-on session for image analysis and ImageJ fundamentals.

A fun analysis of the voting results of the IOF Image Competition 2025 that ran on the Open Campus Day 2025.

A seminar on FAIR principles, scientific image processing, and proper figure preparation.

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

Code related to research on MRF MAP inference.

FPulse is data acquistion system for patch-clamp recordings, based in CED1401 hardware, and IgorPro.