Explore projects

A robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.

This repository contains various scripts for automation (mostly for Linux)

Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.

Booker is a tool for managing multiple resources in a ppms system. It allows to create recurrent but independent reservations or incidents, over one or multiple systems.

To build a linkage map for asian Artemia species (Artemia sinica and Artemia Kazakhstan) based on crosses information and RNA-seq markers.

A Quarto book to document brain registration methods and tools.

Course Materials for Advanced R Course

Batch processing of slide scanner data: How we process (semi-)automatically Zeiss AxioScan Z1 data presented on the Bio-Optics meeting 2025 at Boku.

Workshop about FAIR principles, research data management (RDM) and good practices in figure generation by the Imaging and Optics Facility (IOF) team at ISTA.