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Integrated Python pipeline to process arbitrary-size .czi files

Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.

Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void

A rust lib for loading and manipulating files in fasta format.

FPulse is data acquistion system for patch-clamp recordings, based in CED1401 hardware, and IgorPro.

(ReCA) Recommendation with Context Awareness using Multi-Environment Markov Decision Processes. Mirror of https://github.com/ameroyer/ReCA

A few coronavirus stats based on data from JHU, you need mathematica to run it.

This repository contains various scripts for automation (mostly for Linux)

3D printed hook to exchange samples without the need for draining and uninstalling the chamber.

Video processing pipeline for the pre-processing of fish-eye distorted videos for behavioral analysis. The videos need to be renamed, cropped, and corrected for distortion before being used in the behavioral analysis pipeline for training and prediction.

A robust surface tracking library that handles topology changes in large non-manifold meshes with arbitrary deformations.