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Video processing pipeline for the pre-processing of fish-eye distorted videos for behavioral analysis. The videos need to be renamed, cropped, and corrected for distortion before being used in the behavioral analysis pipeline for training and prediction.

Make the measurements of PIN lateralization automated by measuring the intensity at the basal and lateral side of each cell in the endodermis of the rot tip of Arabidopsis.

Conversion and visualization of TSOAX data

Originally created by Christoph Sommer (ISTA) for AIAI meeting 10/06/2024

Introductory workshop for the use of Jupyter notebooks for image analysis pipelines by the Imaging and Optics Facility (IOF) team at ISTA.

Storage platform to keep a galvo stage insert safe, when not in use

Fastener for multiwell chambered slide holders on a Zeiss stage insert

Robust container to keep immersion objectives safe, when not mounted on the lightsheet microscope

Stand to hold a sample chamber of a Zeiss lightheet horizontally during preparation

A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024