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Integrated Python pipeline to process arbitrary-size .czi files

Quantification of HCR in situ signal speckles in overall area or per individual cell. Main goal is to replicate publication results of difference marker expression between left and right sides in frogs.

Le Groupe Wojtan's Graphics of Gravelly Granular Grandeur

Le Groupe Wojtan's Marvel of Meticulous MPM Mayhem

Glorious GLFW GUI for Frenetic Friction Frolicking

Training material based on Carpentries curriculum Building Better Research Software

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).

This project is to develop an OBS Python script able to automatically trigger OBS to record videos of the set-up scenes of a given duration in a selected time frame. Additionally, experimental metadata for the recorded experiment can be manually input by the researcher through the OBS graphical interface and exported automatically as a table together with the video.

The script will create the wanted videos and a metadata table matched by a video ID, which if left unchanged, will keep increasing by 1 at every iteration of the script. This video ID can be used to record a unique recording session.

Code related to research on MRF MAP inference.

Collection of Imaris Python(3) Extensions from the Imaging and Optics Facility (IOF), Institute of Science and Technology Austria (ISTA)

Make the measurements of PIN lateralization automated by measuring the intensity at the basal and lateral side of each cell in the endodermis of the rot tip of Arabidopsis.

A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024

Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void