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This program allows a series of tests over illumination sources for Zeiss widefield and confocal microscopes running Zen Blue. It is possibe to test:

Short term stability: According to QUAREP-LiMi full test is completed in 5 minutes for each illumination line, testing powers every second. Long term stability: The QUAREP-LiMi protocol stablishes 2h tests per line, with measurement intervals of 30s. To allow this for multiple lines this program interleaves the tests for all lines every interval, allowing the full check to be completed in a single run. Linearity (response): To analyze the linearity -or response curve- of each light source the powers are measured for a series of set powers. These tests can be performed for the desired lines and for different test conditions.

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).

A brief illustration of how Marimo can be useful for image analysis pipelines and user-ready deliverable applications. Originally presented at BioOptics meeting 2024

Homogenized Yarn-Level Cloth - macro-scale cloth simulation using arcsim-v0.2.1

A test application for controlling a Fluigent Aria (https://www.fluigent.com/de/forschung/instrumente/aria/) device under NIS Elements macro. A python TCP listens NIS macros to remote control the Aria system using the Fluigent's SDK (https://github.com/Fluigent/aria-sdk).

Simple IPython based user interface to CARE a toolbox for Content-aware Image Restoration.

Biological Graphic tool in Python

GIT tutorial code

Simple Jupyter based user interface to [CARE] (http://csbdeep.bioimagecomputing.com/) and Noise2void

Filter cellpose segmentations and create filtered tif and csv output of the segmentation

The hlab environment. Contains all of our dependencies, custom control and analysis code.